Be sure to screw that flange down to the floor properly as well and make sure the flange sits on the concrete.
There are as many ways to do this as there are plumbers. You've had two responses and two different methods.
One plumber I knew would wrap the closet riser in cardboard and just shove the end into the closet bend, keeping the riser short, so it would be buried in the concrete. Then, once the slab was poured, he would bust the concrete above it, dig it out, cut and glue in a proper length of riser with his flange on top.
The concrete finishers were always leaving him a wavy floor otherwise, and his WC's would rock.