http://www.wrightsoft.com/order/look...y=US&pid=RSR(J)
That is what I use to get the #'s, I then do the duct design and layout using a ductulator. You can buy the manual D add on to do this for you, but I couldn't justify the added cost to replace something I have been doing by hand for years.
There are also people that do these for a living, so if you won't be doing it more than once, you can just pay a certified energy rater the $150- $200 to do it for you....Or find an HVAC contractor that is professional enough to to the job right and include it in his bid.
Good luck!.